Copier update and dependencies lock.

.copier-answers.yml

@@ -1,5 +1,5 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: c3214e6
+_commit: b87e087
 _src_path: gh:scipp/copier_template
 description: An h5py-like utility for NeXus files with seamless Scipp integration
 max_python: '3.13'

.github/workflows/docs.yml

@@ -71,7 +71,7 @@ jobs:
           path: html/
       - run: echo "::notice::https://remote-unzip.deno.dev/${{ github.repository }}/artifacts/${{ steps.artifact-upload-step.outputs.artifact-id }}"
 
-      - uses: JamesIves/github-pages-deploy-action@v4.7.3
+      - uses: JamesIves/github-pages-deploy-action@v4.8.0
         if: ${{ inputs.publish }}
         with:
           branch: gh-pages

.github/workflows/nightly_at_main_lower_bound.yml

@@ -31,7 +31,7 @@ jobs:
         ESS_PROTECTED_FILESTORE_PASSWORD: ${{ secrets.ESS_PROTECTED_FILESTORE_PASSWORD }}
     steps:
       - uses: actions/checkout@v4
-      - uses: astral-sh/setup-uv@v6
+      - uses: astral-sh/setup-uv@v7
         with:
           python-version: ${{ matrix.python.version }}
       - run: uv run --extra=test --resolution=lowest-direct pytest

.gitignore

@@ -46,3 +46,4 @@ docs/generated/
 *.zip
 *.sqw
 *.nxspe
+*.mtz

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -15,14 +15,14 @@ repos:
         args: [ --markdown-linebreak-ext=md ]
         exclude: '\.svg'
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.8.1
+    rev: 0.8.2
     hooks:
       - id: nbstripout
         types: [ "jupyter" ]
         args: [ "--drop-empty-cells",
                 "--extra-keys 'metadata.language_info.version cell.metadata.jp-MarkdownHeadingCollapsed cell.metadata.pycharm'" ]
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.11.12
+    rev: v0.14.6
     hooks:
       - id: ruff
         args: [ --fix ]
@@ -48,7 +48,7 @@ repos:
       - id: rst-inline-touching-normal
       - id: text-unicode-replacement-char
   - repo: https://github.com/rhysd/actionlint
-    rev: v1.7.7
+    rev: v1.7.9
     hooks:
       - id: actionlint
         # Disable because of false-positive SC2046

docs/conf.py

@@ -274,5 +274,6 @@ def do_not_plot(*args, **kwargs):
     r'https?://github\.com/.*?/blob/[a-f0-9]+/.+?#',
     # Linkcheck seems to be denied access by some DOI resolvers.
     # Since DOIs are supposed to be permanent, we don't need to check them.'
-    r'https://doi\.org/',
+    r'https?://doi\.org/',
+    r'https?://dx\.doi\.org/',
 ]

pyproject.toml

@@ -39,7 +39,7 @@ dynamic = ["version"]
 
 [project.optional-dependencies]
 test = [
-    "pytest>=7.0",
+    "pytest>=8.0",
 ]
 
 [project.urls]

requirements/base.txt

@@ -7,12 +7,12 @@
 #
 h5py==3.15.1
     # via -r base.in
-numpy==2.4.1
+numpy==2.4.2
     # via
     #   h5py
     #   scipp
     #   scipy
-scipp==26.1.1
+scipp==26.2.0
     # via -r base.in
 scipy==1.17.0
     # via -r base.in

requirements/basetest.in

@@ -7,4 +7,4 @@
 # will not be touched by ``make_base.py``
 # --- END OF CUSTOM SECTION ---
 # The following was generated by 'tox -e deps', DO NOT EDIT MANUALLY!
-pytest>=7.0
+pytest>=8.0

requirements/basetest.txt

@@ -1,4 +1,4 @@
-# SHA1:8287decb8676bd4ad5934cc138073b38af537418
+# SHA1:a183f2aaeff6c4f418995809266f8825553a276e
 #
 # This file was generated by pip-compile-multi.
 # To update, run:

requirements/ci.txt

@@ -5,7 +5,7 @@
 #
 #    requirements upgrade
 #
-cachetools==6.2.6
+cachetools==7.0.0
     # via tox
 certifi==2026.1.4
     # via requests

requirements/docs.in

@@ -5,7 +5,7 @@ ipython!=8.7.0  # Breaks syntax highlighting in Jupyter code cells.
 myst-parser
 nbsphinx
 pydata-sphinx-theme>=0.14
-sphinx
+sphinx<9.0.0
 sphinx-autodoc-typehints
 sphinx-copybutton
 sphinx-design

requirements/docs.txt

@@ -1,4 +1,4 @@
-# SHA1:aa7b5bf4690dc2ba74dc15f7758a8235d44dff89
+# SHA1:1b674fbf98bf395cc6ae7012706def6f370b6712
 #
 # This file was generated by pip-compile-multi.
 # To update, run:
@@ -12,6 +12,8 @@ alabaster==1.0.0
     # via sphinx
 annotated-types==0.7.0
     # via pydantic
+appnope==0.1.4
+    # via ipykernel
 asttokens==3.0.1
     # via stack-data
 attrs==25.4.0
@@ -20,7 +22,7 @@ attrs==25.4.0
     #   referencing
 autodoc-pydantic==2.2.0
     # via -r docs.in
-babel==2.17.0
+babel==2.18.0
     # via
     #   pydata-sphinx-theme
     #   sphinx
@@ -40,13 +42,13 @@ contourpy==1.3.3
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-debugpy==1.8.19
+debugpy==1.8.20
     # via ipykernel
 decorator==5.2.1
     # via ipython
 defusedxml==0.7.1
     # via nbconvert
-docutils==0.22.4
+docutils==0.21.2
     # via
     #   myst-parser
     #   nbsphinx
@@ -64,7 +66,7 @@ imagesize==1.4.1
     # via sphinx
 ipykernel==7.1.0
     # via -r docs.in
-ipython==9.9.0
+ipython==9.10.0
     # via
     #   -r docs.in
     #   ipykernel
@@ -125,7 +127,7 @@ myst-parser==5.0.0
     # via -r docs.in
 nbclient==0.10.4
     # via nbconvert
-nbconvert==7.16.6
+nbconvert==7.17.0
     # via nbsphinx
 nbformat==5.10.4
     # via
@@ -156,13 +158,13 @@ platformdirs==4.5.1
     # via
     #   jupyter-core
     #   pooch
-plopp==25.11.0
+plopp==26.2.0
     # via -r docs.in
-pooch==1.8.2
+pooch==1.9.0
     # via -r docs.in
 prompt-toolkit==3.0.52
     # via ipython
-psutil==7.2.1
+psutil==7.2.2
     # via ipykernel
 ptyprocess==0.7.0
     # via pexpect
@@ -209,6 +211,8 @@ requests==2.32.5
     #   pooch
     #   sphinx
 roman-numerals==4.1.0
+    # via roman-numerals-py
+roman-numerals-py==4.1.0
     # via sphinx
 rpds-py==0.30.0
     # via
@@ -220,7 +224,7 @@ snowballstemmer==3.0.1
     # via sphinx
 soupsieve==2.8.3
     # via beautifulsoup4
-sphinx==9.0.4
+sphinx==8.2.3
     # via
     #   -r docs.in
     #   autodoc-pydantic
@@ -230,7 +234,7 @@ sphinx==9.0.4
     #   sphinx-autodoc-typehints
     #   sphinx-copybutton
     #   sphinx-design
-sphinx-autodoc-typehints==3.6.1
+sphinx-autodoc-typehints==3.5.2
     # via -r docs.in
 sphinx-copybutton==0.5.2
     # via -r docs.in
@@ -282,7 +286,7 @@ typing-inspection==0.4.2
     #   pydantic-settings
 urllib3==2.6.3
     # via requests
-wcwidth==0.5.0
+wcwidth==0.5.3
     # via prompt-toolkit
 webencodings==0.5.1
     # via

requirements/nightly.in

@@ -3,7 +3,7 @@
 # The following was generated by 'tox -e deps', DO NOT EDIT MANUALLY!
 scipy>=1.10.0
 h5py>=3.12
-pytest>=7.0
+pytest>=8.0
 scipp
 --index-url=https://pypi.anaconda.org/scipp-nightly-wheels/simple/
 --extra-index-url=https://pypi.org/simple

requirements/nightly.txt

@@ -1,4 +1,4 @@
-# SHA1:444b5ef2a2c9ff87685acd8b81ddfd4460e9687d
+# SHA1:b30ab65358588446f6086cfdb6e24c31a02a7b4a
 #
 # This file was generated by pip-compile-multi.
 # To update, run:
@@ -12,7 +12,7 @@ h5py==3.15.1
     # via -r nightly.in
 iniconfig==2.3.0
     # via pytest
-numpy==2.4.1
+numpy==2.4.2
     # via
     #   h5py
     #   scipp
@@ -25,7 +25,7 @@ pygments==2.19.2
     # via pytest
 pytest==9.0.2
     # via -r nightly.in
-scipp==26.1.1
+scipp==100.0.0.dev0
     # via -r nightly.in
 scipy==1.17.0
     # via -r nightly.in

src/scippnexus/__init__.py

@@ -1,6 +1,6 @@
 # SPDX-License-Identifier: BSD-3-Clause
 # Copyright (c) 2025 Scipp contributors (https://github.com/scipp)
-# ruff: noqa: E402, F401, I
+# ruff: noqa: RUF100, E402, F401, I
 
 import importlib.metadata
 

tests/file_test.py

@@ -2,6 +2,7 @@
 # Copyright (c) 2024 Scipp contributors (https://github.com/scipp)
 
 import io
+import re
 from pathlib import Path
 
 import h5py as h5
@@ -62,6 +63,7 @@ def test_file_from_h5py_group_does_not_allow_extra_args(tmp_path) -> None:
     with h5.File('test.nxs', 'w', driver='core', backing_store=False) as h5_file:
         snx.create_class(h5_file, 'entry', snx.NXentry)
         with pytest.raises(
-            TypeError, match='Cannot provide both h5py.File and other arguments'
+            TypeError,
+            match=re.escape('Cannot provide both h5py.File and other arguments'),
         ):
             snx.File(h5_file, 'r')

tox.ini

@@ -26,8 +26,8 @@ commands = pytest {posargs}
 description = invoke sphinx-build to build the HTML docs
 deps = -r requirements/docs.txt
 allowlist_externals=find
-commands = python -m sphinx -j2 -v -b html -d {toxworkdir}/docs_doctrees docs html
-           python -m sphinx -j2 -v -b doctest -d {toxworkdir}/docs_doctrees docs html
+commands = python -m sphinx -W -j2 -v -b html -d {toxworkdir}/docs_doctrees docs html
+           python -m sphinx -W -j2 -v -b doctest -d {toxworkdir}/docs_doctrees -D nbsphinx_execute=never docs html
            find html -type f -name "*.ipynb" -not -path "html/_sources/*" -delete
 
 [testenv:releasedocs]
@@ -42,7 +42,7 @@ commands = {[testenv:docs]commands}
 [testenv:linkcheck]
 description = Run Sphinx linkcheck
 deps = -r requirements/docs.txt
-commands = python -m sphinx -j2 -v -b linkcheck -d {toxworkdir}/docs_doctrees docs html
+commands = python -m sphinx -j2 -v -b linkcheck -d {toxworkdir}/docs_doctrees -D nbsphinx_execute=never docs html
 
 [testenv:static]
 description = Code formatting and static analysis