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HAWRA: Hardware-Agnostic Wetware-Reliant Architecture. Featuring: BioOS, Arbol Language, PQPE Simulator, and Silica Shield Nanotechnology.

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HAWRA - Hardware-Agnostic Wetware-Reliant Architecture

License Bio-Quantum Preprint Validation GitHub Pages

🌿 Overview

HAWRA is the first pioneering open-source project dedicated to Metabiotic Computing: leveraging living biological substrates for ambient-temperature quantum processing. By integrating synthetic biology with quantum physics, HAWRA transforms the Ficus elastica into a Phyto-synthetic Quantum Processing Entity (PQPE).

"On ne rêve plus, on compile."


🏆 Current Status: LAB READY 🧪

The HAWRA architecture has successfully passed the end-to-end numerical validation for advanced quantum benchmarks and is now ready for biological synthesis.

  • Quantum Algorithms Validated:
    • First Bloom: Initial quantum state preparation.
    • Grover's Search: Amplitude amplification in biological substrates.
    • Deutsch-Jozsa: Determination of biological function parity.
  • Synthesis Ready: Full fragmentation (7 blocks) and Gibson Assembly Protocol finalized for the 18.1 kb cassette.
  • Full Compendium: HAWRA Mega-Report 2026 (v4.0)
  • Executive Summary: Read the High-Level Summary

📢 Media & Recognition

To facilitate global recognition and media coverage, we provide a dedicated press kit and executive summary for journalists and stakeholders.

  • 📰 Press Kit: Key talking points, impact analysis, and media assets.
  • 🚀 Executive Summary: 2-page strategic overview of the project.
  • 🗺️ Roadmap 2026: Interactive project milestones and future vision.
  • 📣 Launch Templates: Ready-to-use templates for social media (LinkedIn, X, Email).
  • 🧪 Zenodo Archive: Formal academic record and data repository.

🌐 Project Presentation & Live Demo

Explore our professional web interface for technical documentation and interactive simulation: 👉 https://selectess.github.io/HAWRA/


📁 Repository Structure (Academic Standard)

The repository is organized following the 00-04 academic convention for clarity and reproducibility:


🔬 Scientific Validation

The project architecture has been numerically validated using a Digital Twin approach, coupling quantum master equations with biological metabolic flux analysis.

Theoretical Pillars:

  1. P700 Coherence: T2 prolongation via biomineralized Silica cage.
  2. Lindblad-Hill Coupling: Unified mathematical framework for bio-quantum state evolution.
  3. BSIM Architecture: Biological Instruction Set for molecular orchestration.

🚀 Quick Start (Reproduction)

Option A: Docker (Recommended)

  1. Build the environment:
    docker build -t hawra-sim infrastructure/
  2. Run the "First Bloom" simulation:
    docker run hawra-sim python 02_bioos_engine/simulations/multiphysics_simulator/validate_simulation.py

Option B: Native Setup (Conda)

  1. Configure Environment:
    conda activate hawra_theory
    export PYTHONPATH=$PYTHONPATH:$(pwd)/02_bioos_engine
  2. Run a simulation:
    python3 02_bioos_engine/simulations/multiphysics_simulator/validate_simulation.py

📖 Key Technical Concepts

  • P700 Bio-Qubit: Native quantum register in Photosystem I reaction centers.
  • Silica Shielding: Genetic engineering of the Lsi1 transporter for T2 coherence prolongation at 300K.
  • Arbol DSL: Domain-specific language for programming biological quantum logic.
  • Lindblad + Hill Coupling: Unified modeling of quantum decoherence and enzymatic reaction kinetics.

🤝 Contributing & Open Science

This project follows Open Science principles. We invite researchers from quantum physics, synthetic biology, and computer science to contribute. Please read CONTRIBUTING.md for details on our code of conduct.


📜 License

This project is licensed under the MIT License - see the LICENSE file for details.


🏷 Citation

If you use HAWRA in your research, please cite:

@preprint{wahbi_hawra_2025,
  author = {Wahbi, Mehdi},
  title = {HAWRA: First Plant-Based Quantum OS with Native Machine Learning},
  year = {2025},
  doi = {10.5281/zenodo.17908061},
  url = {https://github.com/selectess/HAWRA}
}

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HAWRA: Hardware-Agnostic Wetware-Reliant Architecture. Featuring: BioOS, Arbol Language, PQPE Simulator, and Silica Shield Nanotechnology.

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