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  1. tbi-microarray-merge-combat-hippocampus tbi-microarray-merge-combat-hippocampus Public

    Integrated TBI hippocampus microarray analysis (merge + ComBat + limma), with QC and run summaries.

  2. wgcna-LPS-dose-snapshot wgcna-LPS-dose-snapshot Public

    WGCNA (PBS vs LPS dose groups); snapshot of outputs, QC, and parameters.

  3. wgcna-multiGSE-rnaseq-batchcorrected wgcna-multiGSE-rnaseq-batchcorrected Public

    Multi-dataset WGCNA with batch correction; QC-first workflow and parameter logging.

  4. geo-GSE167459-fpi-microglia-rnaseq geo-GSE167459-fpi-microglia-rnaseq Public

    RNA-seq reanalysis of microglial response after FPI; DE + downstream summaries.

    R

  5. geo-merged-GSE198861-GSE198862-rnaseq geo-merged-GSE198861-GSE198862-rnaseq Public

    Batch-aware merged RNA-seq workflow (DESeq2), focusing on reproducible preprocessing and DE outputs.

    Perl