Prepare release 2025.10

.github/workflows/python-package.yml

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14.0-rc.3']
+        python-version: ['3.10', '3.11', '3.12', '3.13', '3.14.0']
 
     steps:
     - uses: actions/checkout@v2

.github/workflows/release.yml

@@ -64,7 +64,7 @@ jobs:
       - name: Install fabio
         run: pip install .
       - name: Install documentation dependencies
-        run: pip install -r requirements.txt
+        run: pip install -r requirements.txt ci/requirements_rtd.txt
       - name: Build doc
         env:
           READTHEDOCS: "True"  # To skip checking that fabio is installed locally
@@ -85,13 +85,13 @@ jobs:
       fail-fast: false
       matrix:
         include:
-          - os: ubuntu-20.04
+          - os: ubuntu-24.04
             cibw_archs: "auto64"
-          - os: ubuntu-20.04
+          - os: ubuntu-24.04
             cibw_archs: "aarch64"
-          - os: ubuntu-20.04
+          - os: ubuntu-24.04
             cibw_archs: "ppc64le"
-          - os: windows-2019
+          - os: windows-2022
             cibw_archs: "auto64"
           - os: macos-13
             cibw_archs: "x86_64"
@@ -111,7 +111,7 @@ jobs:
           # Use silx wheelhouse: needed for ppc64le
           CIBW_ENVIRONMENT_LINUX: "PIP_FIND_LINKS=https://www.silx.org/pub/wheelhouse/ PIP_TRUSTED_HOST=www.silx.org"
           CIBW_BUILD_VERBOSITY: 1
-          CIBW_BUILD: cp38-* cp39-* cp310-* cp311-* cp312-* cp313-*
+          CIBW_BUILD:  cp310-* cp311-* cp312-* cp313-* cp314-*
           # Do not build for pypy and muslinux
           CIBW_SKIP: pp* *-musllinux_*
           CIBW_ARCHS: ${{ matrix.cibw_archs }}

.pre-commit-config.yaml

@@ -2,11 +2,25 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v3.2.0
+    rev: v6.0.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
     -   id: check-yaml
     -   id: check-json
     -   id: check-toml
     -   id: check-added-large-files
+
+repos:
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  # Ruff version.
+  rev: v0.14.1
+  hooks:
+    # Run the linter.
+    - id: ruff-check
+      types_or: [ python, pyi ]
+      args: [ --fix ]
+      files: ^src/
+    # Run the formatter.
+    #- id: ruff-format
+    #  types_or: [ python, pyi ]

ci/appveyor.yml

@@ -34,21 +34,28 @@ environment:
         #  PYTHON_ARCH: "64"
 
         # Python 3.9
-        - PYTHON_DIR: "C:\\Python39-x64"
-          PYTHON_ARCH: "64"
+        #- PYTHON_DIR: "C:\\Python39-x64"
+        #  PYTHON_ARCH: "64"
 
         # Python 3.10
         - PYTHON_DIR: "C:\\Python310-x64"
           PYTHON_ARCH: "64"
 
         # Python 3.11
-        - PYTHON_DIR: "C:\\Python311-x64"
-          PYTHON_ARCH: "64"
+        #- PYTHON_DIR: "C:\\Python311-x64"
+        #  PYTHON_ARCH: "64"
 
         # Python 3.12
         - PYTHON_DIR: "C:\\Python312-x64"
           PYTHON_ARCH: "64"
+
+        # Python 3.13
+        - PYTHON_DIR: "C:\\Python313-x64"
+          PYTHON_ARCH: "64"
 
+        # Python 3.14
+        #- PYTHON_DIR: "C:\\Python314-x64"
+        #  PYTHON_ARCH: "64"
 
 install:
   # Add Python to PATH

ci/requirements_rtd.txt

@@ -1,8 +1,9 @@
-numpy; python_version>= '3.6'
+numpy
 h5py
 sphinx
 cython
 sphinxcontrib-programoutput
 nbsphinx
 lxml>=4.6.3
 pillow
+pydata-sphinx-theme

doc/source/conf.py

@@ -14,6 +14,7 @@
 import sys
 import os
 
+on_rtd = os.environ.get('READTHEDOCS') == 'True'
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
@@ -125,7 +126,7 @@
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
-html_theme = 'sphinx_rtd_theme'
+html_theme = "pydata_sphinx_theme"
 
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the

doc/source/coverage.rst

@@ -1,69 +1,87 @@
 Test coverage report for fabio
 ==============================
 
-Measured on *fabio* version 2024.4.0, 11/04/2024
+Measured on *fabio* version 2025.10.0b1, 28/10/2025
 
 .. csv-table:: Test suite coverage
    :header: "Name", "Stmts", "Exec", "Cover"
    :widths: 35, 8, 8, 8
 
-   "GEimage.py", "116", "90", "77.6 %"
-   "HiPiCimage.py", "61", "54", "88.5 %"
-   "OXDimage.py", "352", "325", "92.3 %"
+   "GEimage.py", "115", "89", "77.4 %"
+   "HiPiCimage.py", "60", "53", "88.3 %"
+   "OXDimage.py", "351", "324", "92.3 %"
    "TiffIO.py", "781", "643", "82.3 %"
-   "__init__.py", "34", "28", "82.4 %"
-   "adscimage.py", "4", "4", "100.0 %"
-   "binaryimage.py", "60", "44", "73.3 %"
-   "bruker100image.py", "286", "243", "85.0 %"
+   "__init__.py", "33", "27", "81.8 %"
+   "adscimage.py", "3", "3", "100.0 %"
+   "binaryimage.py", "61", "43", "70.5 %"
+   "bruker100image.py", "285", "242", "84.9 %"
    "brukerimage.py", "203", "169", "83.3 %"
-   "cbfimage.py", "641", "422", "65.8 %"
-   "converters.py", "17", "14", "82.4 %"
+   "cbfimage.py", "644", "423", "65.7 %"
+   "converters.py", "16", "13", "81.2 %"
+   "datIO.py", "30", "7", "23.3 %"
+   "directories.py", "22", "17", "77.3 %"
    "dm3image.py", "153", "144", "94.1 %"
-   "dtrekimage.py", "170", "141", "82.9 %"
-   "edfimage.py", "916", "703", "76.7 %"
-   "eigerimage.py", "194", "139", "71.6 %"
+   "dtrekimage.py", "169", "140", "82.8 %"
+   "edfimage.py", "920", "725", "78.8 %"
+   "eigerimage.py", "195", "139", "71.3 %"
    "esperantoimage.py", "158", "137", "86.7 %"
-   "fabioformats.py", "90", "65", "72.2 %"
-   "fabioimage.py", "468", "387", "82.7 %"
-   "fabioutils.py", "392", "312", "79.6 %"
-   "file_series.py", "370", "280", "75.7 %"
-   "fit2dimage.py", "91", "76", "83.5 %"
-   "fit2dmaskimage.py", "79", "75", "94.9 %"
-   "fit2dspreadsheetimage.py", "47", "40", "85.1 %"
-   "hdf5image.py", "98", "67", "68.4 %"
-   "jpeg2kimage.py", "82", "74", "90.2 %"
-   "jpegimage.py", "47", "45", "95.7 %"
-   "kcdimage.py", "107", "76", "71.0 %"
-   "limaimage.py", "180", "151", "83.9 %"
-   "mar345image.py", "271", "251", "92.6 %"
-   "marccdimage.py", "66", "58", "87.9 %"
-   "mpaimage.py", "56", "51", "91.1 %"
-   "mrcimage.py", "85", "65", "76.5 %"
-   "nexus.py", "233", "130", "55.8 %"
-   "numpyimage.py", "77", "53", "68.8 %"
-   "openimage.py", "130", "112", "86.2 %"
+   "fabioformats.py", "88", "65", "73.9 %"
+   "fabioimage.py", "469", "387", "82.5 %"
+   "fabioutils.py", "391", "311", "79.5 %"
+   "file_series.py", "369", "279", "75.6 %"
+   "fit2dimage.py", "90", "75", "83.3 %"
+   "fit2dmaskimage.py", "78", "73", "93.6 %"
+   "fit2dspreadsheetimage.py", "46", "39", "84.8 %"
+   "hdf5image.py", "97", "66", "68.0 %"
+   "jpeg2kimage.py", "83", "71", "85.5 %"
+   "jpegimage.py", "46", "44", "95.7 %"
+   "kcdimage.py", "106", "75", "70.8 %"
+   "lambdaimage.py", "146", "115", "78.8 %"
+   "limaimage.py", "179", "150", "83.8 %"
+   "mar345image.py", "270", "250", "92.6 %"
+   "marccdimage.py", "65", "57", "87.7 %"
+   "mpaimage.py", "55", "50", "90.9 %"
+   "mrcimage.py", "84", "64", "76.2 %"
+   "nexus.py", "231", "128", "55.4 %"
+   "numpyimage.py", "76", "52", "68.4 %"
+   "openimage.py", "132", "113", "85.6 %"
    "pilatusimage.py", "43", "38", "88.4 %"
-   "pixiimage.py", "107", "91", "85.0 %"
-   "pnmimage.py", "137", "86", "62.8 %"
-   "raxisimage.py", "103", "91", "88.3 %"
-   "sparseimage.py", "146", "97", "66.4 %"
-   "speimage.py", "162", "157", "96.9 %"
-   "tifimage.py", "128", "121", "94.5 %"
-   "version.py", "40", "35", "87.5 %"
-   "xcaliburimage.py", "586", "462", "78.8 %"
-   "xsdimage.py", "94", "70", "74.5 %"
+   "pixiimage.py", "106", "90", "84.9 %"
+   "pnmimage.py", "136", "85", "62.5 %"
+   "raxisimage.py", "102", "90", "88.2 %"
+   "sparseimage.py", "155", "105", "67.7 %"
+   "speimage.py", "161", "156", "96.9 %"
+   "templateimage.py", "24", "16", "66.7 %"
+   "tifimage.py", "127", "120", "94.5 %"
+   "version.py", "39", "38", "97.4 %"
+   "xcaliburimage.py", "584", "460", "78.8 %"
+   "xsdimage.py", "93", "69", "74.2 %"
    "app/__init__.py", "0", "0", "0.0 %"
-   "app/convert.py", "204", "28", "13.7 %"
+   "app/convert.py", "203", "27", "13.3 %"
+   "app/densify.py", "178", "36", "20.2 %"
+   "app/eiger2cbf.py", "303", "36", "11.9 %"
+   "app/eiger2crysalis.py", "370", "41", "11.1 %"
+   "app/hdf2neggia.py", "201", "32", "15.9 %"
+   "app/viewer.py", "1099", "71", "6.5 %"
+   "benchmark/__init__.py", "30", "15", "50.0 %"
    "compression/__init__.py", "1", "1", "100.0 %"
    "compression/agi_bitfield.py", "171", "148", "86.5 %"
-   "compression/compression.py", "245", "188", "76.7 %"
+   "compression/compression.py", "244", "187", "76.6 %"
    "ext/__init__.py", "0", "0", "0.0 %"
-   "test/__init__.py", "22", "15", "68.2 %"
-   "test/codecs/__init__.py", "87", "81", "93.1 %"
+   "qt/__init__.py", "4", "3", "75.0 %"
+   "qt/_pyqt6.py", "30", "9", "30.0 %"
+   "qt/_pyside_dynamic.py", "75", "5", "6.7 %"
+   "qt/_qt.py", "144", "54", "37.5 %"
+   "qt/_utils.py", "21", "9", "42.9 %"
+   "qt/inspect.py", "25", "11", "44.0 %"
+   "qt/matplotlib.py", "65", "24", "36.9 %"
+   "test/__init__.py", "19", "12", "63.2 %"
+   "test/profile_all.py", "41", "23", "56.1 %"
+   "test/codecs/__init__.py", "86", "80", "93.0 %"
    "utils/ExternalResources.py", "181", "134", "74.0 %"
    "utils/__init__.py", "0", "0", "0.0 %"
-   "utils/cli.py", "60", "48", "80.0 %"
-   "utils/deprecation.py", "67", "63", "94.0 %"
-   "utils/pilutils.py", "49", "39", "79.6 %"
+   "utils/cli.py", "59", "47", "79.7 %"
+   "utils/deprecation.py", "66", "62", "93.9 %"
+   "utils/pilutils.py", "48", "38", "79.2 %"
 
-   "fabio total", "9748", "7661", "78.6 %"
+   "fabio total", "12534", "8174", "65.2 %"

meson.build

@@ -12,13 +12,19 @@ if meson.backend() != 'ninja'
   error('Ninja backend required')
 endif
 
+# C-compiler
 cc = meson.get_compiler('c')
-cy = meson.get_compiler('cython')
 m_dep = cc.find_library('m', required : false)
 if m_dep.found()
   add_project_link_arguments('-lm', language : 'c')
 endif
 
+# Cython compiler
+cy = meson.get_compiler('cython')
+if cy.version().version_compare('>=3.1.0')
+    add_project_arguments('-Xfreethreading_compatible=true', language : 'cython')
+endif
+
 # https://mesonbuild.com/Python-module.html
 py_mod = import('python')
 py = py_mod.find_installation()

pyproject.toml

@@ -59,8 +59,8 @@ requires = [
     "tomli>=1.0.0; python_version < '3.11'"
 ]
 [project.optional-dependencies]
-gui = [ "pyqt5", "matplotlib" ]
-all = ["pyqt5", "matplotlib"]
+gui = [ "pyside6", "matplotlib", "packaging" ]
+all = [ "pyside6", "matplotlib", "packaging" ]
 
 [project.urls]
 homepage = 'http://www.silx.org'