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Introduce ensure_timeline_layers to create missing L0/L1 files for a timeline. Add generate_layers_every_n_messages config and trigger periodic layer generation when a session reaches the message threshold. Expose MCP RPCs generate_layers and index_memories. Update operations to use SessionManager::add_message (returning full message URI) and to delete associated vectors (L0/L1/L2) before removing the file from storage.
Increase default threshold in the vector engine (SearchOptions) and the service search handler to 0.6. Lower the API client's min_score to 0.1 to allow broader frontend results.
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