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ENH: Add ConvertPyImageJ example #23

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Merged
thewtex merged 4 commits into from
May 5, 2022
Merged

ENH: Add ConvertPyImageJ example #23

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30151aa
ENH: Add ConvertPyImageJ example
thewtex May 2, 2022
ae28672
ENH: Install PyImageJ dependencies in CI
thewtex May 3, 2022
974cc40
BUG: Use actions/setup-java for pyimagej CI
thewtex May 3, 2022
4c55e8d
COMP: Pre-install ImageJ in notebook CI setup
thewtex May 5, 2022
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12 changes: 9 additions & 3 deletions .github/workflows/notebook-test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,16 @@ jobs:
- uses: actions/setup-python@v3
with:
python-version: '3.9'
- uses: actions/setup-java@v3
with:
java-version: '8'
distribution: 'zulu'
- name: Install test dependencies
run: |
python -m pip install --upgrade pip
pip install -e ".[test]"
python3 -m pip install --upgrade pip
python3 -m pip install -e ".[test]"
python3 -m pip install pyimagej
python3 -c "import imagej; ij = imagej.init('2.5.0'); print(ij.getVersion())"
- name: Test notebooks
run: |
pytest --nbmake --nbmake-timeout=3000 examples/*ipynb
pytest --nbmake --nbmake-timeout=3000 examples/*ipynb
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