Quality Checking Pipeline

.typo-ci.yml

@@ -1,2 +1,35 @@
+dictionaries:
+  - en
+  - en_GB
+
 excluded_words:
   - stjude
+  - rnaseq
+  - ipynb
+  - bamqc
+  - qualimap
+  - GDC's
+  - gdc-mrnaseq-pipeline
+  - gdc-reference-genome
+  - ENCODE's
+  - encode-rnaseq-pipeline
+  - gtex-rnaseq-pipeline
+  - sjdbOverhang
+  - exome
+  - omics
+  - omics-based
+  - fastqc
+  - ngsderive
+  - SamToFastq
+  - fastq
+  - fastq-screen
+  - unstranded
+  - conda
+  - bioconda
+  - conda-forge
+  - multiqc
+  - fastqs
+  - fqlib
+  - readlen
+  - gtf
+  - Illumina

bin/ci-build.sh

@@ -66,4 +66,4 @@ for CURRENT_BRANCH in "${BRANCHES[@]}"; do
 done
 
 rm ${DRAFTS_FILE}
-git checkout "${STARTING_BRANCH_NAME}"
+git checkout "${STARTING_BRANCH_NAME}"

bin/local-build.sh

@@ -0,0 +1,15 @@
+#!/usr/bin/env bash
+
+[[ -d book/ ]] && rm -rf book/
+[[ -d src/ ]] && rm -rf src/
+mkdir -p src/
+
+printf "# Summary\n\n[Introduction](introduction.md)\n\n" >src/SUMMARY.md
+cp README.md src/introduction.md
+
+for RFC_FILE in $(ls text/* | sort); do
+    echo "- [$(basename ${RFC_FILE} ".md")]($(basename ${RFC_FILE}))" >>src/SUMMARY.md
+    cp ${RFC_FILE} src
+done
+
+mdbook build