EpiMoRPH spatial disease modeling
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Jan 6, 2026 - Python
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metapopulation
Here are 18 public repositories matching this topic...
EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.
social-network network-science metapopulation graph-theory temporal-networks applied-mathematics agent-based-modeling dynamical-systems differential-equations stochastic-processes mathematical-physics agent-based-simulation behavioral-modelling contact-networks computational-epidemiology digital-epidemiology mathematical-epidemiology mobility-networks network-epidemiology epidemic-modelling
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Dec 25, 2022 - Jupyter Notebook
Metapopulations Persistence and Range Expansion Simulation
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May 2, 2025 - AGS Script
This repo contains a slimed down implementation of the code used in "A minimalist model of extinction and range dynamics of virtual mountain species driven by warming temperatures" by Giezendanner et al. (2019) to be used in ECOPOTENTIALs VLab.
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Nov 13, 2018 - Python
Multiplex Mobility Italy at municipality level and SIR Metapopulation simulation
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Sep 5, 2022 - Julia
This repo is the complete workflow for this publication: Tail associations in ecological variables and their impact on extinction risk, Ghosh et al., Ecosphere 11(5):e03132. For details and citation see here:
metapopulation copula extinction-risk-assessment population-model age-structured-model extreme-events tail-association
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Apr 27, 2020 - R
Zylstra, E. R., D. E. Swann, B. R. Hossack, E. Muths, and R. J. Steidl. 2019. Drought-mediated extinction of an arid-land amphibian: insights from a spatially explicit dynamic occupancy model. Ecological Applications 29:e01859
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Dec 21, 2019 - R
Individual-based metapopulation model of devil facial tumour disease.
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Dec 13, 2021 - R
Package for running metapopulation simulations
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Jan 20, 2017 - R
Code for SIR metapopulation model with perimeter lockdowns for Madrid, Spain
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Feb 1, 2023 - Python
PatchSim is a modular metapopulation simulation framework for multi-disease epidemiological modelling.
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Dec 31, 2025 - Python
A software to simulate the spread of culture in structured human populations (metapopulations)
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Jun 3, 2025 - Jupyter Notebook
Simulate and visualize biological invasions in dynamic landscapes
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Sep 1, 2024 - Python
Repository for "Role of inter-related population-level host traits in determining pathogen richness and zoonotic risk" by lucas et al.
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Aug 2, 2017 - TeX
En este repositorio pueden encontrarse los códigos utilizados para realizar el trabajo de tesis de maestría.
metapopulation epidemiology stochastic-control hamilton-jacobi-bellman epidemic-simulations physics-informed-neural-networks
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Jul 8, 2023 - Jupyter Notebook
Simulation models using metapopulation modeling framework to investigate relationship between species-traits (colonisation, extinction, dipsersal) and time lags (extinction debt and colonisation lag) in response to landscape degradation and restoration.
simulation metapopulation occupancy species-traits landscape-restoration time-lagged-response extinction-debt colonisation-lag landscape-degradation metapopulation-theory metapopulation-models
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Nov 27, 2025 - R
Spatial synchrony at the extremes
timeseries birds trait metapopulation copula phylogeny abundance spatial-synchrony lter dispersal climate-extremes tail-dependent-synchrony
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Sep 26, 2025 - R
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