Remove placeholder text and standardize file naming #181
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…cumentation Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
Co-authored-by: d-morrison <2474437+d-morrison@users.noreply.github.com>
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[WIP] Polish code for improved readability and performance
Remove placeholder text and standardize file naming
Jan 22, 2026
d-morrison
approved these changes
Jan 27, 2026
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Pull request overview
This PR addresses several polish issues in the repository by removing placeholder text, fixing incorrect URLs, and standardizing file naming conventions. The changes improve documentation quality and maintain consistency with R package development best practices.
Changes:
- Replaced placeholder title and descriptions with actual package purpose and function documentation
- Fixed R-CMD-check badge URL that was incorrectly pointing to the
dcmrepository - Standardized R source file extensions from
.rto.Rfor consistency
Reviewed changes
Copilot reviewed 8 out of 9 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| DESCRIPTION | Updated package title from placeholder to actual purpose |
| README.md | Corrected R-CMD-check badge URL to point to serodynamics repository |
| README.Rmd | Corrected R-CMD-check badge URL to point to serodynamics repository |
| man/serodynamics-package.Rd | Updated package title in documentation to match DESCRIPTION |
| R/load_data.r | Added comprehensive function description replacing "to add" placeholder |
| man/load_data.Rd | Updated documentation file reference to use .R extension |
| man/prep_data.Rd | Updated documentation file reference to use .R extension |
| NEWS.md | Documented all polish changes made in this PR |
Contributor
|
📖 https://ucd-serg.github.io/serodynamics/preview/pr181 |
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Repository had several polish issues: placeholder text in DESCRIPTION and documentation, incorrect badge URL, and inconsistent file extensions.
Changes
dcmrepo instead ofserodynamics)load_data.randprep_data.rto.Rextension for consistencyload_data()description placeholder "to add" with actual function descriptionWarning
Firewall rules blocked me from connecting to one or more addresses (expand for details)
I tried to connect to the following addresses, but was blocked by firewall rules:
app.codecov.io/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)doi.org/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)lifecycle.r-lib.org/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)r-pkgs.org/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)ucd-serg.github.io/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)www.codefactor.io/opt/R/4.5.2/lib/R/bin/exec/R /opt/R/4.5.2/lib/R/bin/exec/R --no-restore --no-echo --args nextArgserodynamics_0.0.0.9047.tar.gznextArg--no-manualnextArg--as-cran(dns block)If you need me to access, download, or install something from one of these locations, you can either:
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