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Update dependabot branch#278

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schobbejak wants to merge 40 commits intodependabot-updatesfrom
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Closed

Update dependabot branch#278
schobbejak wants to merge 40 commits intodependabot-updatesfrom
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dependabot bot and others added 30 commits July 7, 2024 16:34
Bumps [actions/github-script](https://github.com/actions/github-script) from 6 to 7.
- [Release notes](https://github.com/actions/github-script/releases)
- [Commits](actions/github-script@v6...v7)

---
updated-dependencies:
- dependency-name: actions/github-script
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/setup-node](https://github.com/actions/setup-node) from 3 to 4.
- [Release notes](https://github.com/actions/setup-node/releases)
- [Commits](actions/setup-node@v3...v4)

---
updated-dependencies:
- dependency-name: actions/setup-node
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v2...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v3...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [eifinger/setup-rye](https://github.com/eifinger/setup-rye) from 3.0.2 to 4.2.1.
- [Release notes](https://github.com/eifinger/setup-rye/releases)
- [Commits](eifinger/setup-rye@v3.0.2...v4.2.1)

---
updated-dependencies:
- dependency-name: eifinger/setup-rye
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Updates the requirements on [torch](https://github.com/pytorch/pytorch), [numpy](https://github.com/numpy/numpy), [sphinx](https://github.com/sphinx-doc/sphinx), [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints), [sphinxawesome-theme](https://github.com/kai687/sphinxawesome-theme), [myst-parser](https://github.com/executablebooks/MyST-Parser) and [pygit2](https://github.com/libgit2/pygit2) to permit the latest version.

Updates `torch` from 2.2.2 to 2.4.0
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v2.2.2...v2.4.0)

Updates `numpy` to 2.0.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.22.4...v2.0.1)

Updates `sphinx` from 7.2.6 to 8.0.2
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/v8.0.2/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v7.2.6...v8.0.2)

Updates `sphinx-autodoc-typehints` from 2.0.0 to 2.2.3
- [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases)
- [Changelog](https://github.com/tox-dev/sphinx-autodoc-typehints/blob/main/CHANGELOG.md)
- [Commits](tox-dev/sphinx-autodoc-typehints@2.0.0...2.2.3)

Updates `sphinxawesome-theme` from 5.1.3 to 5.2.0
- [Release notes](https://github.com/kai687/sphinxawesome-theme/releases)
- [Commits](kai687/sphinxawesome-theme@5.1.3...5.2.0)

Updates `myst-parser` from 2.0.0 to 3.0.1
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v2.0.0...v3.0.1)

Updates `pygit2` from 1.14.1 to 1.15.1
- [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md)
- [Commits](libgit2/pygit2@v1.14.1...v1.15.1)

---
updated-dependencies:
- dependency-name: torch
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: numpy
  dependency-type: direct:production
  dependency-group: python-packages
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: sphinx-autodoc-typehints
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: sphinxawesome-theme
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: myst-parser
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: pygit2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
…s/actions/setup-node-4

Bump actions/setup-node from 3 to 4
…ckages-2cb227b3f2

Bump the python-packages group across 1 directory with 7 updates
…s/eifinger/setup-rye-4.2.1

Bump eifinger/setup-rye from 3.0.2 to 4.2.1
…s/actions/github-script-7

Bump actions/github-script from 6 to 7
…s/actions/setup-python-5

Bump actions/setup-python from 3 to 5
…s/actions/checkout-4

Bump actions/checkout from 2 to 4
…tions-in-torch-trainer

Unprivatize functions
* Add DataRetrieval, Data and PipelineDataset classes

* Add tests and update enum

* Add tests for Data & DataRetrieval

* Finish testing PipelineDataset

* Turn TrainingPipeline into dataclass

* Add dataclass to Logger
* Add mixed precision to torch trainer

* Add tests for batch_to_device

* Add tests for torch trainer
* Add Conv1dBnRelu block

* Improve test coverage and fix spelling mistake for Conv1dBnRelu
* Refactor _get_cache to reduce cyclomatic complexity

* Refactor store cache

* Fix errors with cacher

* Remove unused arguments and fix typing
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4.3.3 to 4.3.6.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v4.3.3...v4.3.6)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jasper van Selm <70692744+schobbejak@users.noreply.github.com>
dependabot bot and others added 10 commits December 22, 2024 17:37
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v2...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jasper van Selm <70692744+schobbejak@users.noreply.github.com>
Bumps [actions/github-script](https://github.com/actions/github-script) from 6 to 7.
- [Release notes](https://github.com/actions/github-script/releases)
- [Commits](actions/github-script@v6...v7)

---
updated-dependencies:
- dependency-name: actions/github-script
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jasper van Selm <70692744+schobbejak@users.noreply.github.com>
Bumps [actions/setup-node](https://github.com/actions/setup-node) from 3 to 4.
- [Release notes](https://github.com/actions/setup-node/releases)
- [Commits](actions/setup-node@v3...v4)

---
updated-dependencies:
- dependency-name: actions/setup-node
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jasper van Selm <70692744+schobbejak@users.noreply.github.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v3...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jasper van Selm <70692744+schobbejak@users.noreply.github.com>
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 4.1.7 to 4.1.8.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v4.1.7...v4.1.8)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps the python-packages group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [torch](https://github.com/pytorch/pytorch) | `2.4.0` | `2.5.1` |
| [sphinx](https://github.com/sphinx-doc/sphinx) | `8.0.2` | `8.1.3` |
| [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) | `2.2.3` | `2.5.0` |
| [sphinxawesome-theme](https://github.com/kai687/sphinxawesome-theme) | `5.2.0` | `5.3.2` |
| [myst-parser](https://github.com/executablebooks/MyST-Parser) | `3.0.1` | `4.0.0` |
| [pygit2](https://github.com/libgit2/pygit2) | `1.15.1` | `1.16.0` |



Updates `torch` from 2.4.0 to 2.5.1
- [Release notes](https://github.com/pytorch/pytorch/releases)
- [Changelog](https://github.com/pytorch/pytorch/blob/main/RELEASE.md)
- [Commits](pytorch/pytorch@v2.4.0...v2.5.1)

Updates `sphinx` from 8.0.2 to 8.1.3
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/v8.1.3/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v8.0.2...v8.1.3)

Updates `sphinx-autodoc-typehints` from 2.2.3 to 2.5.0
- [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases)
- [Changelog](https://github.com/tox-dev/sphinx-autodoc-typehints/blob/main/CHANGELOG.md)
- [Commits](tox-dev/sphinx-autodoc-typehints@2.2.3...2.5.0)

Updates `sphinxawesome-theme` from 5.2.0 to 5.3.2
- [Release notes](https://github.com/kai687/sphinxawesome-theme/releases)
- [Commits](kai687/sphinxawesome-theme@5.2.0...5.3.2)

Updates `myst-parser` from 3.0.1 to 4.0.0
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v3.0.1...v4.0.0)

Updates `pygit2` from 1.15.1 to 1.16.0
- [Changelog](https://github.com/libgit2/pygit2/blob/master/CHANGELOG.md)
- [Commits](libgit2/pygit2@v1.15.1...v1.16.0)

---
updated-dependencies:
- dependency-name: torch
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: sphinx-autodoc-typehints
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: sphinxawesome-theme
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: myst-parser
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: pygit2
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Initial move of agogos to epochlib

* Fix tests moving agogos

* Fix requirements

* Reduce required test coverage as 95 is not very realistic or needed

* Update ruff rules

* Add stacklevel

* Update training files

* Remove unnecessary noqa

* Remove last ANN401

* Fix test

* Put on one line

* Fix pre-commit issues
* Initial move of agogos to epochlib

* Fix tests moving agogos

* Fix requirements

* Reduce required test coverage as 95 is not very realistic or needed

* Update ruff rules

* Add stacklevel

* Update training files

* Remove unnecessary noqa

* Remove last ANN401

* Fix test

* Put on one line

* Fix pre-commit issues

* Fix pipeline
@schobbejak schobbejak requested a review from a team as a code owner January 29, 2025 22:10
@schobbejak schobbejak closed this Jan 29, 2025
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