Update dependabot branch

.github/CODEOWNERS

@@ -1,3 +1,6 @@
-*.yaml @TeamEpochGithub/core-maintainers
-*.yml @TeamEpochGithub/core-maintainers
-*.toml @TeamEpochGithub/core-maintainers
+*.py @TeamEpochGithub/packages
+*.md @TeamEpochGithub/packages
+*.yaml @TeamEpochGithub/packages
+*.yml @TeamEpochGithub/packages
+*.toml @TeamEpochGithub/packages
+*.txt @TeamEpochGithub/packages

.github/dependabot.yml

@@ -4,6 +4,7 @@ updates:
     directory: "/"
     schedule:
       interval: "monthly"
+    target-branch: "dependabot-updates"
   - package-ecosystem: "pip"
     directory: "/"
     schedule:

.github/workflows/label-issue.yml

@@ -13,10 +13,10 @@ jobs:
       issues: write
     steps:
       - name: checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
       - name: Check if issue has a milestone
         id: check_milestone
-        uses: actions/github-script@v6
+        uses: actions/github-script@v7
         with:
           script: |
             const issue = context.payload.issue;

.github/workflows/main-branch-testing.yml

@@ -2,50 +2,46 @@ name: Main Branch CI/CD
 
 on:
   push:
-    branches: [ "main" ]
+    branches: ["main"]
   pull_request:
-    branches: [ "main" ]
+    branches: ["main"]
 
 jobs:
-  build:
+  pytest:
     runs-on: ubuntu-latest
-    container:
-      image: python:3.11-slim
-      env:
-        NODE_VERSION: 20
-
     strategy:
-      fail-fast: false
       matrix:
         python-version: ["3.10", "3.11", "3.12"]
-
     steps:
-    - name: Install Node.js
-      uses: actions/setup-node@v3
+    - name: Check out repository
+      uses: actions/checkout@v4
       with:
-        node-version: ${{ env.NODE_VERSION }}
-
-    - uses: actions/checkout@v3
-
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+        fetch-depth: 0
+    - name: Install the latest version of Rye
+      uses: eifinger/setup-rye@v4.2.1
       with:
         python-version: ${{ matrix.python-version }}
-
-    - name: Create virtual environment
-      run: python -m venv venv
-
-    - name: Activate virtual environment
-      run: |
-        . venv/bin/activate
-
-    - name: Install dependencies
-      run: |
-        venv/bin/python -m pip install --upgrade pip
-        venv/bin/python -m pip install pytest
-        venv/bin/python -m pip install -r requirements-dev.lock
-        venv/bin/python -m pip install pytest-cov coverage
-
+    - name: Setup the environment
+      run: rye sync --all-features
     - name: Test with pytest
-      run: |
-        venv/bin/python -m pytest --cov=epochalyst --cov-branch --cov-fail-under=95 tests
+      run: rye run pytest --cov=epochlib --cov-branch --cov-fail-under=75 tests
+
+  build:
+    runs-on: ubuntu-latest
+    needs: pytest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12"]
+    steps:
+    - name: Check out repository
+      uses: actions/checkout@v4
+    - name: Install the latest version of Rye
+      uses: eifinger/setup-rye@v4.2.1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Build the package
+      run: rye build
+    - uses: actions/upload-artifact@v4.3.6
+      with:
+        path: ./dist
+        name: dist-python-${{ matrix.python-version }}

.github/workflows/publish-package.yml

@@ -8,12 +8,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v4.1.6
+        uses: actions/checkout@v4
       - name: Install the latest version of Rye
-        uses: eifinger/setup-rye@v3.0.2
+        uses: eifinger/setup-rye@v4.2.1
       - name: Build the package
         run: rye build
-      - uses: actions/upload-artifact@v4.3.3
+      - uses: actions/upload-artifact@v4.3.6
         with:
           path: ./dist
 
@@ -22,12 +22,12 @@ jobs:
     runs-on: ubuntu-latest
     environment:
         name: pypi
-        url: https://pypi.org/p/epochalyst
+        url: https://pypi.org/p/epochlib
     permissions:
       # IMPORTANT: this permission is mandatory for trusted publishing
       id-token: write
     steps:
-      - uses: actions/download-artifact@v4.1.7
+      - uses: actions/download-artifact@v4.1.8
 
       - name: Publish package distributions to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/retarget-dependabot-pr.yml

@@ -0,0 +1,35 @@
+name: Retarget Dependabot PR
+
+on:
+  pull_request:
+    branches:
+      - dependabot-updates
+    types:
+      - opened
+      - synchronize
+
+jobs:
+  retarget:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v3
+
+      - name: Get all branches
+        run: |
+          git fetch --all
+          git branch -r > branches.txt
+          cat branches.txt
+
+      - name: Find the lowest version branch
+        id: find_branch
+        run: |
+          lowest_branch=$(grep -o 'origin/v[0-9]*\.[0-9]*' branches.txt | sort -V | head -n 1 | sed 's/origin\///')
+          echo "lowest_branch=$lowest_branch" >> $GITHUB_ENV
+
+      - name: Retarget PR to lowest version branch
+        if: success()
+        run: |
+          gh pr edit ${{ github.event.pull_request.number }} --base ${{ env.lowest_branch }}
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/static-analysis.yml

@@ -11,11 +11,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v4.1.6
+        uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - name: Set up Python 3.10.14
-        uses: actions/setup-python@v5.1.0
+        uses: actions/setup-python@v5
         with:
           python-version: 3.10.14
       - name: Run pre-commit

.github/workflows/version-branch-testing.yml

@@ -9,25 +9,25 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Check out repository
-      uses: actions/checkout@v4.1.6
+      uses: actions/checkout@v4
       with:
         fetch-depth: 0
     - name: Install the latest version of Rye
-      uses: eifinger/setup-rye@v3.0.2
+      uses: eifinger/setup-rye@v4.2.1
     - name: Setup the environment
       run: rye sync --all-features
     - name: Test with pytest
-      run: rye run pytest --cov=epochalyst --cov-branch --cov-fail-under=95 tests
+      run: rye run pytest --cov=epochlib --cov-branch --cov-fail-under=75 tests
 
   build:
     runs-on: ubuntu-latest
     steps:
     - name: Check out repository
-      uses: actions/checkout@v4.1.6
+      uses: actions/checkout@v4
     - name: Install the latest version of Rye
-      uses: eifinger/setup-rye@v3.0.2
+      uses: eifinger/setup-rye@v4.2.1
     - name: Build the package
       run: rye build
-    - uses: actions/upload-artifact@v4.3.3
+    - uses: actions/upload-artifact@v4.3.6
       with:
         path: ./dist

.gitignore

@@ -164,9 +164,6 @@ cython_debug/
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
 .idea/
 
-# Ignore data files
-data/
-
 # Ignore logs
 /logging/
 /wandb/

CITATION.cff

@@ -1,6 +1,11 @@
 cff-version: 1.2.0
 message: "If you use this software, please cite it as below."
 authors:
+- family-names: "Selm"
+  name-particle: "van"
+  given-names: "Jasper"
+  affiliation: "TU Delft Dream Team Epoch"
+  email: "jmvanselm@gmail.com"
 - family-names: "Lim"
   given-names: "Jeffrey"
   affiliation: "TU Delft Dream Team Epoch"
@@ -18,11 +23,6 @@ authors:
   given-names: "Cahit Tolga"
   affiliation: "TU Delft Dream Team Epoch"
   email: "cahittolgakopar@gmail.com"
-- family-names: "Selm"
-  name-particle: "van"
-  given-names: "Jasper"
-  affiliation: "TU Delft Dream Team Epoch"
-  email: "jmvanselm@gmail.com"
 - family-names: "Ebersberger"
   given-names: "Ariel"
   affiliation: "TU Delft Dream Team Epoch"
@@ -39,7 +39,7 @@ authors:
   given-names: "Daniel"
   affiliation: "TU Delft Dream Team Epoch"
   email: "danieldediosallegue@gmail.com"
-title: "Epochalyst"
+title: "EpochLib"
 version: 1.0.0
 date-released: 2024-03-19
-url: "https://github.com/TeamEpochGithub/epochalyst"
+url: "https://github.com/TeamEpochGithub/epochlib"

README.md

@@ -1,57 +1,55 @@
-![image](https://raw.githubusercontent.com/TeamEpochGithub/epochalyst/main/assets/Epochalyst_Logo_Auto.svg)
+![image](https://raw.githubusercontent.com/TeamEpochGithub/epochlib/main/assets/EpochLib_Logo_Auto.svg)
 
 [![Team Epoch](https://img.shields.io/endpoint?url=https%3A%2F%2Fraw.githubusercontent.com%2FJeffrey-Lim%2Fepoch-dvdscreensaver%2Fmaster%2Fbadge.json)](https://teamepoch.ai/)
-[![PyPI Latest Release](https://img.shields.io/pypi/v/epochalyst.svg)](https://pypi.org/project/epochalyst/)
-[![PyPI Downloads](https://img.shields.io/pypi/dm/epochalyst.svg?label=PyPI%20downloads)](https://pypi.org/project/epochalyst/)
+[![PyPI Latest Release](https://img.shields.io/pypi/v/epochlib.svg)](https://pypi.org/project/epochlib/)
+[![PyPI Downloads](https://img.shields.io/pypi/dm/epochlib.svg?label=PyPI%20downloads)](https://pypi.org/project/epochlib/)
 [![Python Version](https://img.shields.io/badge/Python-3.10_|_3.11_|_3.12-4584b6.svg?logo=data:image/svg+xml;base64,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)](https://www.python.org/downloads/)
 [![Rye](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/rye/main/artwork/badge.json)](https://rye-up.com)
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
 [![Checked with mypy](https://www.mypy-lang.org/static/mypy_badge.svg)](https://mypy-lang.org/)
-[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/TeamEpochGithub/epochalyst/main.svg)](https://results.pre-commit.ci/latest/github/TeamEpochGithub/epochalyst/main)
+[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/TeamEpochGithub/epochlib/main.svg)](https://results.pre-commit.ci/latest/github/TeamEpochGithub/epochlib/main)
 
-Epochalyst is the base for [Team Epoch](https://teamepoch.ai/) competitions.
+EpochLib is the base for [Team Epoch](https://teamepoch.ai/) competitions.
 
-This package contains many modules and classes necessary to construct the src code for machine learning competitions.
-
-Epochalyst: A fusion of "Epoch" and "Catalyst," this name positions your pipeline as a catalyst in the field of machine learning, sparking significant advancements and transformations.
+This library package contains many modules and classes necessary to construct the src code for machine learning competitions.
 
 ## Installation
 
-Install `epochalyst` using [Rye](https://rye.astral.sh/):
+Install `epochlib` using [Rye](https://rye.astral.sh/):
 
 ```shell
-rye add epochalyst
+rye add epochlib
 ```
 
 Or via pip:
 
 ```shell
-pip install epochalyst
+pip install epochlib
 ```
 
 ### Optional Dependencies
 
 Depending on what data libraries you use, you can install the following optional dependencies:
 ```shell
-rye add epochalyst[numpy,pandas,dask,polars]  # Pick one or more of these
+rye add epochlib[numpy,pandas,dask,polars]  # Pick one or more of these
 ```
 
 Depending on what type of competition you are participating in, you can install the following optional dependencies:
 ```shell
-rye add epochalyst[image,audio]  # Pick one or more of these
+rye add epochlib[image,audio]  # Pick one or more of these
 ```
 
 Aside from that, you can install the following optional dependencies:
 ```shell
-rye add epochalyst[onnx,openvino]  # Optimizing model inference
+rye add epochlib[onnx,openvino]  # Optimizing model inference
 ```
 
 ## Pytest coverage report
 
 To generate pytest coverage report run
 
 ```shell
-rye run pytest --cov=epochalyst --cov-branch --cov-report=html:coverage_re
+rye run pytest --cov=epochlib --cov-branch --cov-report=html:coverage_re
 ```
 
 ## pre-commit
@@ -72,21 +70,11 @@ rye run pre-commit run --all-files
 
 ## Documentation
 
-Documentation is generated using [Sphinx](https://www.sphinx-doc.org/en/master/) and can be found [here](https://teamepochgithub.github.io/epochalyst).
+Documentation is generated using [Sphinx](https://www.sphinx-doc.org/en/master/) and can be found [here](https://teamepochgithub.github.io/epochlib).
 
 To make the documentation yourself, run `make html` with `docs` as the working directory.
 The documentation can then be found in `docs/_build/html/index.html`.
 
-## Contributors
-
-Epochalyst was created by [Team Epoch IV](https://teamepoch.ai/team#iv), based in the [Dream Hall](https://www.tudelft.nl/ddream) of the [Delft University of Technology](https://www.tudelft.nl/).
+## Maintainers
 
-[![Github Badge](https://img.shields.io/badge/-Emiel_Witting-24292e?style=flat&logo=Github)](https://github.com/EWitting)
-[![Github Badge](https://img.shields.io/badge/-Jeffrey_Lim-24292e?style=flat&logo=Github)](https://github.com/Jeffrey-Lim)
-[![Github Badge](https://img.shields.io/badge/-Hugo_de_Heer-24292e?style=flat&logo=Github)](https://github.com/hjdeheer)
-[![Github Badge](https://img.shields.io/badge/-Jasper_van_Selm-24292e?style=flat&logo=Github)](https://github.com/schobbejak)
-[![Github Badge](https://img.shields.io/badge/-Tolga_Kopar-24292e?style=flat&logo=Github)](https://github.com/tolgakopar)
-[![Github Badge](https://img.shields.io/badge/-Ariel_Ebersberger-24292e?style=flat&logo=Github)](https://github.com/justanotherariel)
-[![Github Badge](https://img.shields.io/badge/-Gregoire_Dumont-24292e?style=flat&logo=Github)](https://github.com/Gregoire-Andre-Dumont)
-[![Github Badge](https://img.shields.io/badge/-Kristóf_Sándor-24292e?style=flat&logo=Github)](https://github.com/emherk)
-[![Github Badge](https://img.shields.io/badge/-Daniel_De_Dios_Allegue-24292e?style=flat&logo=Github)](https://github.com/daniallegue)
+EpochLib is maintained by [Team Epoch](https://teamepoch.ai), based in the [Dream Hall](https://www.tudelft.nl/ddream) of the [Delft University of Technology](https://www.tudelft.nl/).