feat: use uv as package manager, ruff added, github actions added

.github/workflows/ci.yml

@@ -0,0 +1,35 @@
+name: Python CI
+
+on:
+  push:
+    branches:
+      - '**'
+  pull_request:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+
+      - name: Install dependencies
+        run: uv sync --all-extras
+
+      - name: Run linting
+        run: uv run ruff check .
+
+      - name: Run tests
+        run: uv run pytest

.github/workflows/deploy.yml

@@ -0,0 +1,37 @@
+name: Python Deployment
+
+on:
+  push:
+    tags:
+      - '*'
+
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.12"]
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v4
+
+      - name: Install dependencies
+        run: uv sync --all-extras
+
+      - name: Run tests
+        run: uv run pytest
+
+      - name: Build package
+        run: uv build
+
+      - name: Publish to PyPI
+        run: uv publish
+        env:
+          UV_PUBLISH_TOKEN: ${{ secrets.PYPI_TOKEN }}

.github/workflows/stale.yml

@@ -0,0 +1,23 @@
+name: Close inactive issues
+on:
+  schedule:
+    - cron: "30 1 * * *"
+
+jobs:
+  close-issues:
+    runs-on: ubuntu-latest
+    permissions:
+      issues: write
+      pull-requests: write
+    steps:
+      - uses: actions/stale@v5
+        with:
+          days-before-issue-stale: 365
+          days-before-issue-close: 14
+          exempt-issue-labels: "pinned, security"
+          stale-issue-label: "stale"
+          stale-issue-message: "This issue is stale because it has been open for a year with no activity. It will be closed if no further activity occurs. Thank you for your contributions."
+          close-issue-message: "This issue was closed because it has been inactive for 14 days since being marked as stale. Feel free to re-open it if it is still relevant."
+          days-before-pr-stale: -1
+          days-before-pr-close: -1
+          repo-token: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -27,6 +27,11 @@ coverage
 *.sln
 *.sw?
 
-.serena/
+# VSCode
+.history
 __pycache__
+
+debug.py
+.serena/
+plans/
 .venv/

.ruff.toml

@@ -0,0 +1,46 @@
+# Ruff configuration file
+
+# Exclude a variety of commonly ignored directories.
+extend-exclude = [
+    "__pycache__",
+    ".git",
+    ".venv",
+    ".eggs",
+    ".nox",
+    ".tox",
+    ".svn",
+    ".hg",
+    "build",
+    "dist",
+    ".mypy_cache",
+    ".pytest_cache",
+]
+
+# Assume Python 3.10.
+target-version = "py310"
+
+# Line length with preview to format
+line-length = 120
+preview = true
+
+[lint]
+# Enable flake8-bugbear rules
+select = [
+    "E",      # pycodestyle errors
+    "W",      # pycodestyle warnings
+    "F",      # pyflakes
+    "B",      # flake8-bugbear
+    "C4",     # flake8-comprehensions
+    "UP",     # pyupgrade
+    "SIM",    # flake8-simplify
+]
+
+# Allow autofix for all enabled rules (when `--fix`) is provided.
+fixable = ["ALL"]
+
+# Ignore B008 for Typer - typer.Option in argument defaults is standard Typer practice
+# Ignore E501 - long lines in help text are acceptable
+ignore = ["B008", "E501"]
+
+# Allow unused variables when underscore-prefixed.
+dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

Makefile

@@ -1,17 +1,28 @@
 install:
-	uv sync
+	uv sync --all-extras
 
 test:
-	uv run pytest
+	uv run --all-extras pytest
+
+lint:
+	uv run ruff check .
+
+fix:
+	uv run ruff check . --fix
+
+format:
+	uv run ruff format .
+
+check: format fix
 
 build:
 	uv build
 
-publish:
-	uv publish
-
 clean:
 	rm -rf dist
 
-local-install:
+local-install: clean build
 	pip install ./dist/datashield-*.tar.gz
+
+local-install-force: clean build
+	pip install ./dist/datashield-*.tar.gz --break-system-packages

datashield/__init__.py

@@ -1,2 +1,7 @@
-from datashield.interface import DSConnection, DSLoginInfo, DSDriver, DSError
-from datashield.api import DSLoginBuilder, DSSession
+from datashield.interface import (
+    DSConnection as DSConnection,
+    DSLoginInfo as DSLoginInfo,
+    DSDriver as DSDriver,
+    DSError as DSError,
+)
+from datashield.api import DSLoginBuilder as DSLoginBuilder, DSSession as DSSession