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@yoldas yoldas commented Feb 2, 2026

Closes #

Changes proposed in this pull request

  • Rake task and library to check study and sample data between Sequencescape and EBI
  • See the rake task code documentation for usage

Instructions for Reviewers

[All PRs] - Confirm PR template filled
[Feature Branches] - Review code
[Production Merges to main]
    - Check story numbers included
    - Check for debug code
    - Check version

@yoldas yoldas changed the title New Y25-582 - [PR] Check study and sample data uploaded to the EBI EGA & ENA databases (New SS) Y25-582 - [PR] Check study and sample data uploaded to the EBI EGA & ENA databases Feb 2, 2026
@yoldas yoldas changed the title (New SS) Y25-582 - [PR] Check study and sample data uploaded to the EBI EGA & ENA databases Y25-582 - [New SS PR] Check study and sample data uploaded to the EBI EGA & ENA databases Feb 2, 2026
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codecov bot commented Feb 2, 2026

Codecov Report

❌ Patch coverage is 81.69014% with 39 lines in your changes missing coverage. Please review.
✅ Project coverage is 87.37%. Comparing base (181fa9f) to head (a1c2bed).

Files with missing lines Patch % Lines
lib/tasks/ebi_check.rake 13.15% 33 Missing ⚠️
lib/ebi_check/utils.rb 86.04% 0 Missing and 6 partials ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##           develop    #5510      +/-   ##
===========================================
- Coverage    87.40%   87.37%   -0.04%     
===========================================
  Files         1457     1461       +4     
  Lines        32705    32917     +212     
  Branches      3423     3451      +28     
===========================================
+ Hits         28586    28761     +175     
- Misses        4104     4135      +31     
- Partials        15       21       +6     

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@yoldas yoldas requested a review from StephenHulme February 2, 2026 17:44
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